PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BS_3EEBE3D51.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 189aa    MW: 20330.6 Da    PI: 9.7752
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BS_3EEBE3D51.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26072.11.1e-22497186
                 DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee...redamsslvyeAearardPvyGavgvilk 82
                           +C++C+vlr++C+++C+++p++     +++q++++ +++k++G++ +l+ll+a+ +++   r+++++sl+yeA+ r+ + vyG+vg++++
  Traes_5BS_3EEBE3D51.1  4 SCNGCRVLRNGCSDGCTIRPCLewirsADAQANATVFLAKFYGRAGLLNLLAAAGPDDagvRPALFRSLLYEACGRMVNRVYGSVGLLWS 93
                           6*********************9999667889**********************55443579**************************** PP

                 DUF260 83 lqqq 86
                           +q+ 
  Traes_5BS_3EEBE3D51.1 94 GQRG 97
                           9985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.2713111IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-18496IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MRMSCNGCRV LRNGCSDGCT IRPCLEWIRS ADAQANATVF LAKFYGRAGL LNLLAAAGPD  60
DAGVRPALFR SLLYEACGRM VNRVYGSVGL LWSGQRGPAR PPSRALVEAV LKGCPVVRVT  120
SDAPLTACDI RHVAKVGPAA SPEAAAAGTL LGVSRTRAHH VQARVSRLSL WIQSKNEKQF  180
ELDWVEKIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577486.13e-62PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9M8867e-56LBD41_ARATH; LOB domain-containing protein 41
TrEMBLW5FLU51e-136W5FLU5_WHEAT; Uncharacterized protein
STRINGBRADI4G16740.12e-64(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.12e-46LOB domain-containing protein 40
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]